NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10000008

Scaffold Ga0210384_10000008


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10000008 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)331856
Total Scaffold Genes316 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)217 (68.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051255Metagenome / Metatranscriptome144Y
F067349Metagenome / Metatranscriptome125Y
F070201Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1000000815F067349GGCGGMAAPNRPSILISAALAVATPFLGGAMAWRLLDDDGRSGLVYVLVYWPSILLDALPGVVADAFTVSALPTVLLYFGGYLLLCQGVRALWRRPR
Ga0210384_10000008196F051255GAGGMNAAAAYIAHANHAANDYARSLAARTMVRAAMHSDAVVYRRTWPTLEAIETLGEAEYDPSLRFNGFLDSTLDLRDGLSVVEVFAPIDEPAALREFALLRG
Ga0210384_10000008234F070201GGAGMRTMPLQFLTWGTITAAVGSAVWLSSADQAAVFCSVGYRATSQAMGIDVPLPTEEPTRAGPSAKLPGSSAAKQLQANAG
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