NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1004801

Scaffold Ga0213920_1004801


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1004801 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5145
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003265Metagenome / Metatranscriptome496Y
F040586Metagenome161N
F103130Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100480111F103130GAGGMKRIDLWKAKLKIAKAERRIRERDANAANRALMRVRATITELENKIERHLAKP
Ga0213920_10048013F003265AGGMRVLLFLLLLLLSRATAKEACIVSDFYGLSWLGNPSERHQRLSEWLTTNGNACSSEQLVGIWNNLALWAGVADSSELRSKVLYYYAKAVERERK
Ga0213920_10048018F040586N/AMSDKQWIIFNQLGGSEWLRKTLDKKAPMPAKYYRLEIDAPSKKEIND
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