NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190361_1001051

Scaffold Ga0190361_1001051


Overview

Basic Information
Taxon OID3300021469 Open in IMG/M
Scaffold IDGa0190361_1001051 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10634
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096387Metagenome104Y
F105221Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0190361_10010513F105221GAGGMVKYYKGFEHTNSSDDEEKIVTLTSTEEEKKKLNAVVITHRLSNDTLLIAYLEREKIIDNIRIEASPVGNDPYRFMVDIEIPVGQTFTLMLKNQSAGSNGGVVGYYEYEITG
Ga0190361_10010517F096387AGGAGGVSYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIAGIAGYTLKRVREE

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