NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210392_10239360

Scaffold Ga0210392_10239360


Overview

Basic Information
Taxon OID3300021475 Open in IMG/M
Scaffold IDGa0210392_10239360 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1282
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001481Metagenome / Metatranscriptome687Y
F043662Metagenome / Metatranscriptome156Y
F066055Metagenome / Metatranscriptome127Y
F101758Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210392_102393601F066055N/ARTADRAIACLRRAIEELAAERPREARAMVVNAAGSLAALREMIEGQILKQPGMVK
Ga0210392_102393602F043662N/AMTVPSITNVKVSIYNDSATLFRLSWEHDGAHYHVWIDRHTYTIEPDPAYKRPTLYKNPPQNVHVSMDGYFRTRKLDARKHGIVDTVLAHAKRAGLFEAAIAKIKVRERD
Ga0210392_102393603F101758N/AMRPTEENPLQGAALSIEASPNTSSTKNKKASTMKSIPPDSFLKDYKKRRSAFLEELIASTPNLSVRAKEFRRWIEENSPHSNNDEA
Ga0210392_102393604F001481N/AMTKRKTWLDFALSPDADWPPHQPITLTDLVAGARAVDWDFTTWCYVSGYHASGPDACRMFECLLAYARREGRAGLH
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