NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000067

Scaffold Ga0210410_10000067


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000067 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)176482
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (75.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F033311Metagenome177Y
F047848Metagenome / Metatranscriptome149Y
F097887Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000006710F097887GAGGMQTFDNGGKQIGRIDQSFSKDKSVTVHEIRNITTITVRDRSTGEVTTETLIGQSPFGTSE
Ga0210410_1000006713F047848AGGAGGMMDYVHMFVLRTLCLDEDGEIRSRNVAVTFDMFEAEDHRNKGVENGYDTFVVPGNWREEL
Ga0210410_1000006714F033311GAGMRELAEAFLAEGKTVRAAALMLNLIKTEPTPENLELLAEIYALQGLYEDAAVLYLRVVKMSLKMEPLHAEE
Ga0210410_100000673F000092GAGVKQHLQRQSGVANVEVSLIDGKVDVTPKEDGQIEPAQLLKATYDSGVTVAELDMTASGKVVKDTSGNLSLQVKPNQSFVLAPNELSKGLEPLVDSATVVTVRGQLYKKPAGKKKADASAPLRLLILEVQKKE

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