NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000196

Scaffold Ga0210410_10000196


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000196 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85335
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (89.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F039315Metagenome / Metatranscriptome164Y
F046308Metagenome / Metatranscriptome151Y
F085191Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000019629F039315N/AMKAMAALDKMSLTELEDLAAKLRHTIARNPGHSRMEQVKLEDVKQWIAIRQNGDSSESEP
Ga0210410_1000019634F085191AGGMRGLGRSTTEGDPYRFFSPEQVDKILCEGVRRGRAGSHAAIERILKLEPGIERAELWQRIRQLKYPSNGTRYRRIVWSTDDDQILSRGYEKGWSGKQQAIRELLKRHPDWRPHLIWRRAAKLHLTRKTPKRGQERSRLAWSEDDDRILLNLAGYKTSRVLAKLLHRSEVAVRYRLMVLGKSSRVHLEGFARHALARDLHLASSTIQRLIAGGLLEVRDPRITRESLDNLCQSGRLDAIPQNVAPASDGLTTGLEREMTTLAGSDPPAGDRTRQSTPSGKLSRAKRVWAEVAKSLGVAVEAVQNFVARGVLKLYDPTITEQSLRHFCRRYGSLIDYDFLNRETREWLESSMDWVRTAGESTSRRLAPLRKHARVIRHCTACDREIRGNAFFRHIKKCDQRCSANNQNQMVSNSAW
Ga0210410_1000019652F005419AGGAGGVAAGVTEAVGEGKDLQTNRPLRGTRKLRMGHANGVEGQRFFLAKPGGSNGVPEFTKELTGEPEAMVESLKTGLSYFIISEWRGVADFSGKKPQLGREAARGAPKTG
Ga0210410_1000019667F046308AGGAGVTQDQDRKMEVIKFTDQLRAAGVTTVTVSYYGDGDEGRAEPPQFQDAAHNPMDESSLQANLDIRKLGDLLEGFAPEGYEDGEGGHGTITFDLQTGKIRVEHNWYEIVSNPADPREI

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