NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10479900

Scaffold Ga0210409_10479900


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10479900 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1106
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027622Metagenome / Metatranscriptome194Y
F081565Metagenome / Metatranscriptome114Y
F099563Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_104799001F027622AGGAMSDADWLALWAEFAQAIDNEQLEVAERIIYLDGRWNFTELSSSKLIAAARQIIRERVEGR
Ga0210409_104799002F081565GAGGMNHSTNYTAELDQTDEDFFCEVSDEALETAAGADIEGQCIVTVGPTIIVGGCC
Ga0210409_104799003F099563GGAGGMFVTLSSEARECRLYAEHCADRAQLQSDPQLRKDYLEMQRRWLALASSYEFAEELEFLSAVEARNKETRRIFEDAVA
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