Scaffold Ga0126371_10009199

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126371_10009199

Scaffold Ga0126371_10009199

Overview

Basic Information
Taxon OID	3300021560 Open in IMG/M
Scaffold ID	Ga0126371_10009199 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8892
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021365	Metagenome	219	Y
F024236	Metagenome	206	Y
F035516	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1000919910	F021365	N/A	MNAVIKIEATRARLSFVVVVFGVAFSAAYFLERLLRDYMRTEIQPNGDRNDIAGSLPKWLCRNKQYLGAKDQGKGERREGLWYWLPS
Ga0126371_1000919911	F024236	GGAG	MHLVLVFTVAVGLYVLGMIVLALAAISGRVRGNRELKRLEPELH
Ga0126371_100091998	F035516	GGGGG	MNRNAFALFGAVAVLLTATVALTLSRATLSEGGSNLKCYDLKGGIERCSTVDRPPLVVRTSVRHAGLD

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