NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10217975

Scaffold Ga0126371_10217975


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10217975 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2011
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000792Metagenome / Metatranscriptome890Y
F002887Metagenome / Metatranscriptome523Y
F025240Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_102179752F025240N/AMLLRPEYLSQKLDQALPTKDGGTLRTIREACDYMTSMGKQRELRTHWQRACKLILAKADVMTVSRALELALFMDAKLDVAAKELPATAAGARSR
Ga0126371_102179753F002887GAGGMAPKPKSKPARFVFAVAMALTILAVMTWEMAAPSSPIYPIYQPQLLLLY
Ga0126371_102179754F000792GAGGMREHVLLFCLLGLVLIATIILVTAPGAVTWALALIE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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