NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_12906248

Scaffold Ga0126371_12906248


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_12906248 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)581
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002711Metagenome / Metatranscriptome535Y
F006915Metagenome / Metatranscriptome362Y
F033785Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_129062481F002711GGAGGMSESLGLTSHKSNCNCTGCGMLRAGVCINCAEKIAALILESGPGELAAEPCSGACREAIELYFSTPPERWRAPRAL
Ga0126371_129062482F033785GAGMGQLVLKRASASRLSGEWNDDDYDVLCEDAVVGRIMKAAAAPLASVEA
Ga0126371_129062483F006915GGAGMDAKTRNLALLATLSLFCAGVAWISDHLVLGSVFFALGAAAALGVAESHWR
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