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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021563 Open in IMG/M |
| Scaffold ID | Ga0190353_100001 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-11-12_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 66547 |
| Total Scaffold Genes | 89 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 63 (70.79%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033663 | Metagenome | 176 | Y |
| F036512 | Metagenome | 169 | N |
| F048033 | Metagenome | 148 | N |
| F084956 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190353_10000120 | F036512 | GGAGG | MYWKVPDYLKKYIRIQDMLRNIFRPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPSPSEEMEEINPWKFITKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG |
| Ga0190353_10000126 | F084956 | N/A | MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFIGKIKSETQRTIMGKGNIMSELSCVSRFDELTHRYLKEGDQKDYHGTLSEVIQQFISVAGMDIESKSANDVDMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDNAGNPIYVTGDAVDEMAASNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEITLADLVYPVFGNVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK |
| Ga0190353_10000183 | F048033 | AGGAGG | MIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQIEGEDLNEDMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE |
| Ga0190353_10000185 | F033663 | AGGA | LIDVIKKGRSEIMQQESLRENVTQVYGIRCKVEDEKIQEWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMSMLRDLVLGKFNILLVIEEEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |