NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190351_1000144

Scaffold Ga0190351_1000144


Overview

Basic Information
Taxon OID3300021587 Open in IMG/M
Scaffold IDGa0190351_1000144 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7418
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055334Metagenome138N
F076704Metagenome117N
F084957Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0190351_10001443F084957AGGAGGMNIEDYKKKNTKKIKCPSGLEVTVNNITPYTLLKVVDNLGINPTREAVYTKPVIDALFKAFLKEPVIGRDIEIEDFLREDYIFLHDLIFERVTLPEE
Ga0190351_10001446F076704AGGAGGMAEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSFLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH
Ga0190351_10001447F055334AGGAMTSLVDKLNSVMDTLKTEIDDALSDYKVMHFIRFPSATDFFPVCFIVPIRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
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