NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190362_1004972

Scaffold Ga0190362_1004972


Overview

Basic Information
Taxon OID3300021592 Open in IMG/M
Scaffold IDGa0190362_1004972 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-5-6_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084956Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0190362_10049721F084956N/AMRRKRTRAICGIAICGYTICGDTSYYLPTVASSDIKGVAQVTTPDGWFTYFFPLVRAEVILNQPFTDDSATITIVHNGQLLLDSDVSIHLGKGLKKVVFMGKIKSEAQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDYHGTLSEVIQQFIAVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITNINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPIFGRVRVNLPGITKILELKSLRYTLDENGLFTTLY
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