NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187839_1071587

Scaffold Ga0187839_1071587


Overview

Basic Information
Taxon OID3300021854 Open in IMG/M
Scaffold IDGa0187839_1071587 Open in IMG/M
Source Dataset NameMetatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCTB_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1791
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0187839_10715872F038745N/AMNRAVAAVCGELMQASLALTAYYPLCLGGRPCAYAEAMERLIRRAASARGAEELLAAINGRVRLEELGMPPPVLEALTEVLGPEPRWLDALAASFFRLYLGLHRRRRVDGRDLAFALCLWAQKKRLEDPWNPLWRAAELEPDRLYTEEEARRALKIDERHFKRLWMRAQTFHSNEKAYGFQLILAALSLMAASPRSV
Ga0187839_10715873F051572GAGGMNSGRTHAGPFAEVRTLADVVLDSCKKSAHFLRAHIDLCVLAALVKTAPAGAMVKLRPAQAWRLLEELAAAGQDREKTRNALRKRAGEVLAQLGREMGGSVPAEALLAKLSELFLKELEA
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