Scaffold Ga0063144_1057997

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063144_1057997

Scaffold Ga0063144_1057997

Overview

Basic Information
Taxon OID	3300021899 Open in IMG/M
Scaffold ID	Ga0063144_1057997 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S27 C1 B23 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	591
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	59.500026	Long. (^o)	-18.069873	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000953	Metagenome / Metatranscriptome	822	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063144_10579971	F000953	N/A	KFAVLALLGVVAAKDYDASPKYYTPFDHEATYYERATTPRFSADTDDIFMRSMIEQYALEERTKVHEADDGLKSGGEPSGKFWMNEAAANAAAREVLTTHKGLTGKLLDDYMTTYFTKSWGHFDVNQTGFIEVIKMPQMMRFLCSDQYMSLGESG

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