 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10001025 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35812 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (75.47%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000273 | Metagenome / Metatranscriptome | 1401 | Y |
| F006696 | Metagenome | 366 | Y |
| F024973 | Metagenome / Metatranscriptome | 203 | Y |
| F025978 | Metagenome | 199 | Y |
| F061661 | Metagenome | 131 | Y |
| F071151 | Metagenome | 122 | Y |
| F103126 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_1000102524 | F025978 | GGAG | VVTKKLKSLAINHPTMPAYPADKFEVFKNAVMVELANRKNTHDAKWGIDRLVWLVDTELREKVWLQLERVWQAQEERNDQKLDKAVKGMCKAYDAMEAWANANNVSKLPNLRQIEHQQADGTVFVIVPDEASKRLYCQQWPGTTDREVWTAAEIAIIMARQADGKISEIKRQWPDSKLVKVGGPSGFEDMVNDLDMTTPSKMPKLFDTKAFVK |
| Ga0222712_1000102534 | F061661 | AGGAG | MRYREHYTIQPVTRKWAEIALALAIGVGLAFFLFMGV |
| Ga0222712_1000102535 | F103126 | GGAG | MSESMQKEIDAVVDELSPQPGQIGILTTHELRAHLRMAATKGTLIGWVGAERLTSARYKQDYDNLAQHCKDLELEIMELKR |
| Ga0222712_1000102537 | F006696 | AGGA | MKFIKFLKDYYRDLTPAEVIQRELAQAHLDRLEAEGAVEYAQAVLDMNMTRIERLNTRLGEYK |
| Ga0222712_1000102540 | F071151 | AGGAGG | MTTCCDYGKCTNGPDCPVRKQRVKEINDAYANGFKDAQLNDPIDDLADTFKALLTLLTVVLCGWIAFLLFWGK |
| Ga0222712_1000102543 | F024973 | GAG | MIWTLVLLTGINMNSILVVGYFEAESACQKAAKEWRKLGYKVGCVQTQKK |
| Ga0222712_1000102545 | F000273 | GGA | MSEEKIQNMEAKGQLIEKITFALLPLLFSCVVYLMSALSNLAHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEEEIQRNRDQIAENRMHIAILEEKTPVNNKIKSLTGKD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |