NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10004165

Scaffold Ga0222712_10004165


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10004165 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15284
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (86.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F001176Metagenome / Metatranscriptome756Y
F003582Metagenome / Metatranscriptome478Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000416510F001176N/AMSNGTGMDTPPNSSPAGAVTSQEATRKNPTQGKFKSGITQRPPTKIDTNKHGIRRETSIVPKKTRPKKV
Ga0222712_1000416524F000671GAGGMEKILCYSCNKTKNKLNAKKSSLLPINLLMCETCISSKFEPRWVIILAARSHGSEFVKEFVIKRRYIGKDIAASELLI
Ga0222712_1000416530F003582N/AMNIYSVKIEINAEVEAFSSEDAIDYANDIFGVDDEVKSVKVISVKEK
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