NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10148051

Scaffold Ga0222712_10148051


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10148051 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1587
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015420Metagenome / Metatranscriptome255Y
F071222Metagenome122Y
F102554Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101480511F015420N/AMKKLIKYFTPVGEEQKACAIAMLIVTTVILSILFLFT
Ga0222712_101480512F071222N/AMDKEQIMKIILAEEASLYDQAKESTNAFGRKDEATIRAYAQWYAITNLIDRINEETN
Ga0222712_101480514F102554N/AVPKTRLDKKIEYRLKVKTIYKDRIVEKAKAKATQPRPRGNLSLLFVGVGIGLLLSYLFKFAREKYLF

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