NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1002300

Scaffold Ga0224906_1002300


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1002300 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8803
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F065668Metagenome127N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10023002F065668AGGAGGMLYTIWVGGVEVTTHLTNREEAYRIASNWRNDGYSDVIVERYKPYAYRS
Ga0224906_10023006F105152GGAGMSREYCRVDDCPSYDYSDYEDSTGYYTPYDDREVDYDPIEQPEMYKRLKEVKTRLGVKQD
Ga0224906_10023008F014373AGGAGMSRCKACDVILTEAELRKRDRVTDEHLDLCSVCHSASDEAIEENWSIAEDNGIIRSNN

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