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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022170 Open in IMG/M |
| Scaffold ID | Ga0190366_1000002 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-9-10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 74831 |
| Total Scaffold Genes | 113 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (56.64%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026175 | Metagenome | 198 | N |
| F038025 | Metagenome | 166 | Y |
| F084955 | Metagenome | 111 | Y |
| F093028 | Metagenome | 106 | N |
| F096386 | Metagenome | 104 | N |
| F100147 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190366_100000215 | F084955 | GGAGG | METLYLTANALDKLTVLCPQTLKNLDEDAAFLAEEIISKYNKEKVKSAEKLIFHAITTVSKYLLTGRAEDNELDALLIYFENLFIDTGENPIEALIGVFTYYLLSKPHFDSYRHLISSYVFDEIDLGEAA |
| Ga0190366_100000223 | F026175 | GAG | MALQSIKILNTGKENITKLLTGLGGYAYAAIGVGNDATAAAETDEHLLGSETNFKDGNQSYFQNANNSYIAQWNSTWVYNDLPSNQISEAAVAQNATNGTVNCLLRCTFDTIYLDADSSFSLILQVSPTQA |
| Ga0190366_100000232 | F038025 | N/A | MSKLKFTGLIGDAEILRRSFWWLYQQGWISKESVSEEDYRDLGLEFPNGYERFDREEIREERYVRTRLGKRISLEKLKDLI |
| Ga0190366_100000246 | F093028 | N/A | MNLEEYKKWKSPKELELPSGLKIKVRDLSPWDLLVAASKQKEYKPNDPQLIEHLMKKFIVWPEIGKDWQIDDIRPDDFVFLQTKLFESFSLERFDNAIKEVESIKEEHKDFSE |
| Ga0190366_100000247 | F096386 | N/A | MSKEISVRPSDLLDPYHEEDAITRFAIDLVALVSDIEREPEIERPDINPEEDSLRKRDLEFKKKYNITLEQAKKIVFGNSNGSCRQQ |
| Ga0190366_10000028 | F100147 | GGA | MPKRSIFRGFIFAELQSFRKSNLDIPVMVLQANVPIWDSTAYDRGFQIPADVLRKSIPKDCVPLFLFHDHHERLGHLCEFKYNPYKKALFAKLKILPQKKEKVLRLIKSEGINGISLELETLEERGRYLNKVLRMKITGAALVDRPACRKCRVKLFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |