NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0216338_1107741

Scaffold Ga0216338_1107741


Overview

Basic Information
Taxon OID3300022390 Open in IMG/M
Scaffold IDGa0216338_1107741 Open in IMG/M
Source Dataset NameGoat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044232Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0216338_11077412F044232GGAGGMKKLLSMILSILMIIPLCISGVSAEENDISKFELTAPKAPNYFVYTDGDASEGHHDDLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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