NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212125_1000532

Scaffold Ga0212125_1000532


Overview

Basic Information
Taxon OID3300022545 Open in IMG/M
Scaffold IDGa0212125_1000532 Open in IMG/M
Source Dataset NameSSW_combined assebmly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23967
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Nevada, Gerlach, Sandy's Spring West
CoordinatesLat. (o)40.653Long. (o)-119.3749Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063403Metagenome / Metatranscriptome129N
F084856Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0212125_100053215F084856GAGVLYFHDGIIRPAERGDVMPNVSDLIIVTHIYSKSHLEALSETLPEWRKLAPSARILVGYYANRFQASEFGTLLAENVELVPVHNSSYGAAYDTLLERTIGQPILILAPYAIPKEWFIGAHGSLFSWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGTILVRARPGAYLLYNALAAGYPVMTLARNCNPVRYVKRADKKAEKW
Ga0212125_10005323F063403N/AVLVDSNPEKEDLNLEEAMFLMEQNISRAEALNALRVAIRSVRRSPIKLPFGDDERFFIEIRIPRFAERLDLQMAAQLMLAGLGGSERLVAALPSLITSFRLPAETESGEIMQAVYNAEPLPDIPVLNLTPADLFSDSSDFNATPMLMTMIITALMELSGRTQTVAAGVNELLELFPGTNSNSANILEQGSSRVSGNQ
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