NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000190

Scaffold Ga0212123_10000190


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000190 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)210878
Total Scaffold Genes200 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (54.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030823Metagenome / Metatranscriptome184Y
F033936Metagenome / Metatranscriptome176Y
F033976Metagenome / Metatranscriptome176Y
F043021Metagenome / Metatranscriptome157Y
F065479Metagenome / Metatranscriptome127Y
F095804Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000190156F030823GAGGVKGETLMEHKTISTEVRGTKRVLSLIAGLSAVVSVVAAVVRGIAGSQIHDYSHPIIGFLGVCMILGLFVALLALNTRLQVAFDEAEDRSLAEDAEG
Ga0212123_1000019041F095804AGGMKTLIIFLLGLIIGGVAMLFLPDSRRDELNAEIRTQTGALQAQLQRFGDQSKGLNQPKTENNSPTPAPSVVGRS
Ga0212123_1000019068F033936GAGGMLLGNSGTIDENGHTKIDSELSYSPSLEAAMNQVLGHPAFVAEKATPSFKFIRAARFLKENAPHAFRLPEMGTPTHNSMDRWLWNLLD
Ga0212123_1000019070F033976N/AMSFQKKASSAGKTQGNVLEQRRAVSLIDLAANLDDPIYRRAIGKLSVIFEELESINATCMQPPQGGLGLRRYIE
Ga0212123_1000019071F043021N/AMQSLLSHEMPSGERSAPATFNVVLIYEDFETRERAKKSLDYVGQEFGNDCEFRHSMWRLDILQDPKLNALAAPSLAEADLLIVSLRCERQVPDKILALIDERLAQTVNPECALVAPFERSAPATRSSVYACLATLARRHGFDLFEQAVTDAEDQAEPSLKLVWAF
Ga0212123_1000019079F065479AGGAVADQPDQKQPGTTLAFQEALMQAIELWDQTPVSILDQQAVQTHALLLAMGKYITYRKEKGELESCADGSDFMNRLIKDL
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