NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100241

Scaffold Ga0248169_100241


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100241 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90668
Total Scaffold Genes166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)100 (60.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F006053Metagenome382Y
F098537Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_100241121F001957AGAAGGMNSVDMANNLIFRAKHLQEFTITVNVTEDFRFNGVVPFDMNIANGVITAKVYGIDFEEALSTFQNYIESCK
Ga0248169_100241166F098537N/AMKKLLILLSIMLSGCTVIDAYLMTHYDPNEYSLITSIRSEAMEFKDQCDDAIISKANANKLASDTQLFMLYSEHIPKNKDLIAASQSLNEIAKGLADQYAKVAKISPAFCKIKFSNVETSADKMQTVIAGRPR
Ga0248169_10024135F006053AGGAGGMKVRKLILKLNKAEMEHKLDKAKKFWFKLLKKSFKHKHTEAVR
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