NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000099

Scaffold Ga0214917_10000099


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95645
Total Scaffold Genes138 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (76.81%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Associated Families17

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000473Metagenome / Metatranscriptome1097Y
F001106Metagenome / Metatranscriptome776Y
F001280Metagenome / Metatranscriptome732Y
F002501Metagenome / Metatranscriptome553Y
F003582Metagenome / Metatranscriptome478Y
F003643Metagenome / Metatranscriptome475N
F006841Metagenome / Metatranscriptome363Y
F010085Metagenome / Metatranscriptome308Y
F014144Metagenome / Metatranscriptome265Y
F016396Metagenome / Metatranscriptome247Y
F035307Metagenome172Y
F066776Metagenome / Metatranscriptome126Y
F073544Metagenome / Metatranscriptome120Y
F073565Metagenome / Metatranscriptome120Y
F080026Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000009912F001280GGCGGMCVECGCESVGSETGISSVTINDVSKDGESGLTFKMTATPEQRERFINE
Ga0214917_10000099129F003643AGGAGGLATKQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKK
Ga0214917_1000009913F073565AGGAGMSDGKDLKGFNETKPVTTTSWSGVQYAADPNKNFSATDKSTQDGAGVGNGGK
Ga0214917_10000099133F010085AGGAGGVQKIQYVSKYIALSEEGLVPRLICPMDQGLLLCNMSINEEIFLYCISCNYKQYLGNAMYDKIVALVEKNLNEA
Ga0214917_10000099137F080026AGGTGGMAYTQDQMEFAHMVVFRLKEILKVCPNVDDNYSCMTISQKAHQRCYDLMVLLAEITNLPEYLQYLGNHPDTKTNPYGYITQLPPARKIVEETVDLENEV
Ga0214917_1000009924F016396GAGGMRKSERLRLLEMQVVRLEMMVELYTQTLNNILEAQGLEINSLDAGKWYTDKINKINNK
Ga0214917_1000009929F073544AGAAGGVKKYYEVVNVVFIHEERSYGTVEALGTYASKVKYEKDGKEIEEIMENDEFTVMDEIVFEHIEEDN
Ga0214917_1000009930F000473AGGAMELIGNKDHFKHGINLWNGEPNKPVFYTKEMSIKVREIKKPVPDLMLDVVQYPDFLALRLYEDNFIQYQGTKKEMVIDYVDRVKKLIESYGVRCELEGVPSEKILRSS
Ga0214917_1000009932F066776AGGAMLNLTLKGVEVFIKKSQTNRQESFWDNYDLMIWKKDSGGYTSIKGMYRKDNWGIAERVSVNNEGIWKLPTKYVRYFK
Ga0214917_1000009935F003582N/AMNTYKVKLEVDAEILAYSEEDARDYITDIYGLDEEILRIKIVDIKEK
Ga0214917_1000009952F000369AGAAGMSEIELSERFDRMNKVVEELLKGNSPTQIATATGLQRKEVLELIDDWKQVVHNDSNIRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLGVKSGALKLIADIEAKRIGMLQSIGVLENNELASQLAETERKQEILVKILKEVTSSCSKCKLDVAKRLSQITGVVEPVVIDSEQVSGA
Ga0214917_1000009973F014144AGGCGGMASRVVVCDICSKEIELRWGIFGHDALSRHRKAEHK
Ga0214917_1000009975F002501GGAMMTCGKCNGRVFVDRVFSQKLHVELFCILCGKRNMINKETSAFGRWLENVENQNSKNYGISS
Ga0214917_1000009986F006841AGGAGGLATTVYNVEEVTLQDGSIAKLKPLSIKELRKFMAVITKTADVTEQSQSLDLLIEACGVALEGQLPNLVKDKDALEAALDIPTINRILEVCGGIKMDDDNANLTQAAVLAGMN
Ga0214917_1000009988F000258GGAGGMSPSVNDYKHDVMYDLRSHLWQELLEADLFNPQDYYSDNLGEELIPIIPVQQLPEMNQFLNGKKHIVYDKIGLSYEENWVICCEQILFTIYSTDISDIVQIRNMMTDVYRRMDETATEINRDYSVLSEKFKFYSVFIADISPTTPSEELAGFFSSDVILEVKYARNVDTAGRFD
Ga0214917_1000009989F035307GGAGLDSSAVLVQAASGLHKYMSGTSGIVLKDSTVAQVSAAVYYQSKVMSKLTTNKQFQEKFRSVIFSQIQKDFGEYIDAQARINPSTLHHVYEWKKTGNKTSRLFALEIRESIGLSFRLGYSFKDSKSMVPTNYGKSRHVFKNKAAVMEAGDPVVIRPRAAERLVFEIDERVIRMPKGAAVTVKKPGGGKATNRFQIAYARFFTSNLVNLSIKKSGFQQIFNSSLTKAMKLPVDIKKVRYSFSPNTVDLQATSAVASAFGGI
Ga0214917_1000009992F001106AGGAGMSFETLKVAELREIAENFAVDTDGIKSKANIIAALAEEGVTWSVYQKTLDTVKEANEDAFASEEVLPRLDTKSINAEDTVLVRMTRENFRYDILGFTFTKEHPFVAMNENQAQEIFDKEEGFRLATPKEVQEYYG
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