Scaffold Ga0255783_10118756

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255783_10118756

Scaffold Ga0255783_10118756

Overview

Basic Information
Taxon OID	3300022923 Open in IMG/M
Scaffold ID	Ga0255783_10118756 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1348
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003326	Metagenome / Metatranscriptome	494	Y
F077787	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255783_101187561	F077787	GGAGG	MAGEDKGFKVVLSYDVQKTFYVEAENEEEAYDKAYAGDGEVENEDWEYRD
Ga0255783_101187563	F003326	N/A	PQHSYRRLMATIEQKKKLIKTIKNPIRYFRLNFSRYGGEVAMGTITKDQWEYWSDNDGFEEYMGQVDFDAEEANKEIPKRAQFDQPFYEYSNICHLSGPEWADSQTMYIEEIDKDGQPLENEDGGYVQDIQHDFEDFESLGAEIVCDEEHHASSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGFDMDKLTIEMVNADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVAKGDNLK

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