NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10000356

Scaffold Ga0214921_10000356


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000356 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86843
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (78.10%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Associated Families15

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F001106Metagenome / Metatranscriptome776Y
F002501Metagenome / Metatranscriptome553Y
F003379Metagenome / Metatranscriptome490Y
F004006Metagenome / Metatranscriptome457Y
F018177Metagenome / Metatranscriptome236Y
F035307Metagenome172Y
F058150Metagenome / Metatranscriptome135Y
F060898Metagenome / Metatranscriptome132N
F077287Metagenome / Metatranscriptome117N
F090403Metagenome / Metatranscriptome108N
F092052Metagenome / Metatranscriptome107Y
F093318Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000356100F093318AGTAGGMQIQYVSKYIALSQEGLVPRLECPMDQGPLFPNQNGEDRVFVYCLSCQYKKILGTKDYDDIVKAVDNVK
Ga0214921_10000356101F092052GGTGGMSNECKSGQCACEQEENFFHVKVIPQNSAKLSAAEEETFSSYEFESNALSEKDAMGREIFWEDMGRP
Ga0214921_10000356103F003379GGAMKKISAFIMLIATAILSGVALSKFLNWAGQQEDFFDFDLNEDIDLEQF
Ga0214921_1000035612F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYSGIVLCPTTFANVIEYKRIWKSAGHRPMGNIRKHFSEYVQQIVEETIDKNEDGTIQ
Ga0214921_1000035614F000369N/AMSEIELSQHFDRMNRVVEELLKGSTATQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIAAQIAETERKQDVLVRILKEVTSTCPKCKMDVAKRLSQITGVIESVSVEEADVV
Ga0214921_1000035627F018177GGAGMPNINEFLNKPERIFSPELEKIGGIKPCNKCDKDSEEYFWDAVSMTISWECPDGHKNSYVVG
Ga0214921_1000035630F004006AGGAMTQDIEELVASINMNQVLVAILEEHEKVVVPTLRFLDVNVSNKELVIDYDETGPSFTFSLRETDGIKSDSD
Ga0214921_1000035637F090403GGAMTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVVKSVKGDDDGE
Ga0214921_1000035639F077287N/AMGKAYAMKDVSALLNKHTVTLHDYILEGKIKAPQKIYPIGDPDNKNWSKYMFNEKDILELHEFILDSGHSGNVPSRTELLGLLKHNIILYTKTDSGFIPVWKAE
Ga0214921_1000035640F002501AGGMWCGKCNGRVFVDRVFSQKLHVELFCIMCGKRWMCNKETSAFGRWLEKKETATLKNYGIS
Ga0214921_1000035654F060898AGAAGMPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDAAPQGKTFEDVQRQALGIKASGDDIVSLQGSFAAQAGFGIGAGLGYTEE
Ga0214921_1000035657F000258GGAGGMTDYKADIMVDLRKYLWSELTANSIFKSTDYYSDNIGQEIIPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFIADISPTAPSEELAGFLSTDVILEVKYARHLNTTGRFL
Ga0214921_1000035658F035307GGAMAGTSGSVLKDSTVAQISAAIYYQAQVISKITTNKQFQKKFQSVIFKQIEQDFGLYIDSKSRTNPKSLHHVYEWKKTGNKSARLFKLKVLSTDGLSFKITSDFLPSKSVVPSNFGNKRHVFINKASVMEAGVPLVIRPRFAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFKIAYAQFFTGNLINLSIKKSGFQQIFNSSLTKSMKLPSDIKKVKYSFNANTLNMHAESAIASAFGGVV
Ga0214921_1000035660F058150N/AMEILVGSNSPVTHKVFWQGKLTDSDSLPVVRLYDITEDPAISPPINPGTILATLTAIKSEVDAGTYVVYIPVSYTTRQRQLRLNWSYTVGSVSTEKSHKVYVQTPYTDMSQAIDALGLGSDYSDPNSKSYFELCNAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYMNDILLLNNLTNVSNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPMNDTYNGVFANGITYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI
Ga0214921_1000035661F001106AGGAGMSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNLDSQPENTMLVRMTRENYRYDILGFTFTKEHPFVAMTADDAQEIFDKEEGFRLATPKEVQEYYA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.