NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000990

Scaffold Ga0214921_10000990


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000990 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49719
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (80.30%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Associated Families17

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000447Metagenome / Metatranscriptome1128Y
F001106Metagenome / Metatranscriptome776Y
F001562Metagenome / Metatranscriptome670Y
F003379Metagenome / Metatranscriptome490Y
F005531Metagenome / Metatranscriptome397Y
F006841Metagenome / Metatranscriptome363Y
F009143Metagenome / Metatranscriptome322Y
F019325Metagenome / Metatranscriptome230Y
F035307Metagenome172Y
F037095Metagenome / Metatranscriptome168Y
F038205Metagenome / Metatranscriptome166Y
F051126Metagenome / Metatranscriptome144Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y
F092052Metagenome / Metatranscriptome107Y
F093318Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100009901F038205GGAMSKIKEYIEIIAANCDECGGAGFLFFGDENNYDCEPCDCISD
Ga0214921_1000099010F019325AGGAGMTQLNETLFSTIVHEYHNGGVKSSYGLDTYTRKELLKFLFSSKACYCIECVCEVTHTA
Ga0214921_1000099015F003379GGAVKKLSALIMLIATAILSGVALNKFLNWAGQIEIFDFDLDENIDKEDL
Ga0214921_1000099017F092052N/AMLNECKNGQCACEEENNFFHVKVIPQNSANFSAAEEETFSSYEFESNAIIHKDAIGREIFWQDLGRP
Ga0214921_1000099018F093318AGTAGGMQIQYVSKYIALSEEGLVPRLECPMDQGPLLPNQDLEDQVFLYCLSCQYKKVLGTKDYDDIMKAVENVK
Ga0214921_100009902F051126AGGMSAKPYTIASLLEGKYYRSHSRHDEGIINYAEKRDGIWYGENFEAYVVRVSPTRGIKDFWATVAVKVSD
Ga0214921_1000099022F037095AGGAGMAKINKADLNKDGKVTMTEQILAALGTYARAFLSAAIALYMTGNTSPRDLLMGGFAAVAPVILKALSPTNKEFGFTNK
Ga0214921_100009904F001562AGGAMEKTQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMENE
Ga0214921_1000099058F001106AGGAGMSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPNSQPENTMLVRMTRENYRYDILGFTFTKEHPFVAMTSDDAQQIFDKEEGFRLATPKEVQEYYA
Ga0214921_1000099059F058150N/AMEILVGSNSPVTHKVFWQGQLTDSDALPVVKVYDITEDPAISPAINPGTVLATLTPVKSEVDSGTYLVYIPLTYTNRQRQLRLNWSYTVGGVSAQKDHKIFVQTPYTDMSQSIDSLGLGSDYSDPNSKSYFELCNAERYARKLIEAYTGQQFYLYDDVQIAYGSGSDILPLPYKLSELHELYQNDILLLDTIHSINNWNYNTIISESGFGLRVNRANMLDNTVYTANGMIPPTINDTWGGSFSTGSTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKAVQTFDWQFEYNSSVYSGTGNLYADQLLLPYVINKMVVI
Ga0214921_100009906F000447AGGGGGMGYIEIFRLDEQGAGWVDLSEATPDELLNIEIGLFQEGAI
Ga0214921_1000099060F056615N/AMYDLIDSFMPMFMDVYKQFDLQDSNTGAIKKEWQFDRTVPCSAKGIISNSSASRSGDKQVMSNKYLNDQILQVRTSEKLSLREKITNIRDSEGNVIWEELNFPTNTPTVFELMGITPMTDPLGGVVAYNSTVKRSENQTIGQ
Ga0214921_1000099061F035307GGALDNSSVLVTAASGLQKNMAGTSGKILKDSTVAQISAAIYYQSQVVSKITTNKQFQTKFQSIIFNQLEKDFGLYLDSQARINPKSLHHVYEWNKTGNKSSRLFKLNILNSNGLSFKIGSTFLSSKSSVPNNFAKKRYVFANKASIMESGMPLVIRPRAAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKNSGFQRLFNSSITKAMKLPSDIKKVKYSFSPNTLNMQAESAIASAFGGAV
Ga0214921_1000099062F000258GGAGGMTDYKTDIMLDLRKFLWDQLKTNNIFTATDYYSDNIGQEIVPIIPIQQSPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFVADISATTPSEELAGFLSTDVILEVKYARHLDSVGRFL
Ga0214921_1000099064F006841AGGAGGLATTIYSTEEVKLQNGTTVILKPLSIKELRKFMAVIQKTATAEDQTESLDVLIEACGVALEKQVPDLVKDRDAFEDALDIPTINRILEICGGIKMDEESSNLTQAAVLAGMN
Ga0214921_100009908F005531GGAMTITYTLWQGSTLLAVNQKANKPEEILAVIEELNKLGKGFTYNIREVDTK
Ga0214921_100009909F009143AGAAGMMTKWDTIQADVSDAYVYLDEEEAYNKALAEGLEFGSDEYDEDELSKSLTLDWDN
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