NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001452

Scaffold Ga0214921_10001452


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001452 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40427
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (79.22%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Associated Families15

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001280Metagenome / Metatranscriptome732Y
F002501Metagenome / Metatranscriptome553Y
F004006Metagenome / Metatranscriptome457Y
F007921Metagenome / Metatranscriptome342Y
F012975Metagenome / Metatranscriptome275Y
F014017Metagenome / Metatranscriptome266Y
F016396Metagenome / Metatranscriptome247Y
F018177Metagenome / Metatranscriptome236Y
F026561Metagenome / Metatranscriptome197Y
F073544Metagenome / Metatranscriptome120Y
F090386Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000145210F002501AGGMWCGKCKGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGRWLDKKETANLKNYGIS
Ga0214921_1000145219F004006AGGAMTDDIEGLVTSISMNQVLVAILEEHGKLTVPTLRFLDANVDNKELVIDYDELGPSFTFSLREKNAIRSDSN
Ga0214921_1000145222F018177AGGAGMPNINEFLNKPEKIFPSELEKIGGTKPCNKCEKDSEEYFWDAINMTISWECPNGHKNSYVVG
Ga0214921_1000145235F000369AGAAGMSEIELSEHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIAAQIAETERKQDILVKILKETTSTCPKCKMEVAKRLSQITGIIESVPVEEADVV
Ga0214921_1000145237F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYNEIVLCPTTFTNVIEYKRIWIAAGHRPMGNIRKHFSEYVQQIVEETIDKNEDGTL
Ga0214921_1000145252F012975AGGAMLYLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNLKGMFRKDQWGVTERIAVNEQGIWKLPSKYVKHFK
Ga0214921_1000145254F000473AGGAMEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIRDIKKPDIHLQMDIVRYPDFLTIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN
Ga0214921_1000145255F073544AGGGGGVREYYEIIKIVFIHAERVYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHIEESN
Ga0214921_1000145256F000671GAGGMEKILCYSCNKTKNKLNVRKSILIPINLLMCETCISSKFEPRWVVILAGRQLGSDAVKEFIIKKKYIGNEIAASELLV
Ga0214921_1000145260F016396AGGAMRKSERLRLLEMQVVRLEMLVELYTQTLTNLLESQGMQSPTQLDAGKWYQAKLNKLDNE
Ga0214921_1000145265F014017GAGMDNLTEYLHEKHRKKIADEIRYLELPPEWRPHEVIRYIVRIIEKNNG
Ga0214921_1000145270F001280AGGAGMCDVCGCGALGSSTGIVPVTITDVSRDGESGLTLDMTSTPEQTRQFINE
Ga0214921_1000145271F026561N/AMSNFTKDDGTGMTPPPAAGSASGAVTSREATRKYPKQGVKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
Ga0214921_1000145273F007921AGGAMIDWLVNRIFRWDPLRKAIFDEVRLYQSIDKAMWEHDRLYPTNLTWSEGNRWYGWTYNPQLKRYYFDDIGNESLMGLWEDQWLKEADEGLLK
Ga0214921_1000145277F090386AGGMAYSRFYDSDIYIYPSVFGWIECSGCFLNTSPDEDTIFKSERIHDDKTLLMHMLQHRISGHNIPDGLEA
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