NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10002465

Scaffold Ga0214921_10002465


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002465 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29971
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (64.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F007747Metagenome / Metatranscriptome345Y
F020510Metagenome / Metatranscriptome223Y
F048158Metagenome / Metatranscriptome148N
F081048Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000246534F048158N/AMARPVNHDVKRAMAATGKSRATVYLQRNKVEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKVLAARDNALVPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL
Ga0214921_1000246538F007747AGGAGMKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGMKQLKKDQEAVIEYVIKKALEGLVKK
Ga0214921_1000246539F081048AGGAGMSVKRITWQIEILERAKKSLADGRVVVTRCRLDLALHIAKEMLKRAKVYQKRDLEKKK
Ga0214921_1000246542F020510AGGAMTLAQLLSMFSARIIGTYTPEQYANCVQEARANRMRWGMGQW
Ga0214921_100024656F006891N/AMSTDQVAELSERLSLVRESIARIETRQGVIMDMLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.