NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10010146

Scaffold Ga0214921_10010146


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10010146 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11721
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F020510Metagenome / Metatranscriptome223Y
F041639Metagenome159N
F043284Metagenome156N
F081048Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001014611F043284AGGMKLLSVINKLNETRDKAIELVGRTIALASDAGEIIAVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLSSGDADPCLMRQTYLRIGILPDPITISEPSEPKHFLFPIMKARQWLASRGAKFIAQDKALREQFLAEAEPIVKAYNDLRGAA
Ga0214921_1001014612F041639N/AMGRRPNTAILAQAAATGVGLRQARRQLEKKQGVPNAKPMKPIAGIGLDGEIDRLESLAATLGEAAKEASGSERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRPAAEIQKEVENEVGQVMRQVQAAL
Ga0214921_100101462F016963GGAGGMIEVLPDETTHDQLLNRVRSLARELAEAKAALAASEARENDLIDRIRSGL
Ga0214921_100101463F005502AGGAGMRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVMK
Ga0214921_100101465F020510AGGCGGVSLQDLLIMFSARVIGTYTPEQYADCVREARANRMRWGMGQW
Ga0214921_100101466F081048GGAVVSVKRLTWQIEILERAKKSLIDGRLVIARSRLDMALHIAKELLKRAQTYQKRDLEKKK
Ga0214921_100101468F007747AGGAGMKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDEEAVIEYVIKKALKGFAKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.