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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10015522 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8679 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (66.67%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001280 | Metagenome / Metatranscriptome | 732 | Y |
| F006846 | Metagenome / Metatranscriptome | 363 | Y |
| F011394 | Metagenome / Metatranscriptome | 291 | Y |
| F014017 | Metagenome / Metatranscriptome | 266 | Y |
| F028166 | Metagenome / Metatranscriptome | 192 | Y |
| F066776 | Metagenome / Metatranscriptome | 126 | Y |
| F072349 | Metagenome / Metatranscriptome | 121 | Y |
| F078716 | Metagenome / Metatranscriptome | 116 | N |
| F088905 | Metagenome / Metatranscriptome | 109 | Y |
| F105192 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1001552218 | F105192 | N/A | MNIPLAEIIITLFAAAISGLLTAQFSARRSKKEKIEHLAEKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYYQALQELIRVKAELEGTLLKLTHIEIHSNED |
| Ga0214921_1001552219 | F072349 | AGGCGG | MDKVLCYSCNKSKNELSLKKSLILPINLLLCKTCSDNKFEPRWTVILAGRQYGSDHVKEFISKKKYTGPDITASELLI |
| Ga0214921_1001552221 | F011394 | AGGA | MFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIREIKKPTPTLEMDIVKYPEFLAIRLYEDNFSQYDGSMRVRVIEYIEMVKNILESYGVRVELEGKPGGRR |
| Ga0214921_1001552223 | F066776 | AGG | LLHLTEKGVEVFIKRSRTKLQESFWNNYDLVIWKKDSGGYTDLKGMYRKDAWGKAEKISVSREGIWKLPKRYVKYFK |
| Ga0214921_100155223 | F006846 | AGGA | MLTDLVEKYLMRPKRLREAIQDVVRENDELLRIIKEYEQDETPTNLTWSEGDTWYGWTYNTKLKRYFFDDIGNESLMGLWEDQWAREKESEDKNMFENQVDFE |
| Ga0214921_100155224 | F078716 | GGA | MPAPSNSEPSGALTSREVPRKYPKQGSRPGIKIDQNKHGIRRETSLDPKPQKKGRPKKV |
| Ga0214921_100155225 | F001280 | GAGG | MCIECGCESVGSETGIIPVTITDVSRDGESGLTLGMTSTPEQTRQFINE |
| Ga0214921_100155226 | F088905 | N/A | MSEKDIDTTPVVETLVAEEAKPKAEAKAAPADADATVDYWANAWANRGV |
| Ga0214921_100155227 | F028166 | AGGAG | MTNGIDLTGFNELHGGDSNNLDLNPTGQAPAAAFPAEDKSTQDGAGLGQNGK |
| Ga0214921_100155229 | F014017 | AGG | MDKIEDYLDEKHRKKIADEIRYLELPPEWRPHEVIGYIVRIIEKSNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |