NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10018591

Scaffold Ga0214921_10018591


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10018591 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7604
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003379Metagenome / Metatranscriptome490Y
F005531Metagenome / Metatranscriptome397Y
F006744Metagenome / Metatranscriptome365Y
F009143Metagenome / Metatranscriptome322Y
F017134Metagenome / Metatranscriptome242Y
F017995Metagenome / Metatranscriptome237Y
F051126Metagenome / Metatranscriptome144Y
F092052Metagenome / Metatranscriptome107Y
F093318Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100185911F017134GGAMEKFTVACLNYEICGAEETFYSDEEYEIFGDDYTCAECYASEEMEFYELTGWADSDALASAGFGMDEDY
Ga0214921_1001859111F000447AGAAGGMGYIEFARIDEMGVEWVDLADSTPQELLDFEIALFQEGAI
Ga0214921_1001859112F006744AGAAGGMNLDEFKAHVLATRQASKAEALSVLSATITEKKEGSN
Ga0214921_1001859113F005531GGAGGMTITYTLWQGSNLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVDTK
Ga0214921_1001859114F009143AGGAGMMTKWDTIQADVSDAYVYLDEEEAYNKALEEGAISVIDFDDFDEDELSKSLTLNWED
Ga0214921_1001859121F003379GAGMKKIWALITLIATAILSGVALNKFLNWAGQIEIFDFDLDENIDKEYL
Ga0214921_1001859125F092052GGTGGMLDECKNGQCACEEEENFFHVKVITQNSANFSAAEEETFSSYEFEANAIIDKDAIGREIFWNDMGRP
Ga0214921_1001859126F093318AGTAGGMQIQYVSKYIALSEEGLVPRLKCPMDQGPLLPNLDLEDKIFLYCLSCEYKKFIGAKDYDDIVKAVDNVR
Ga0214921_100185916F017995GGAMANVKQYLEIISAECDECGGAGFLFFGDENNYDVETCECVSDVADELTVDWVNE
Ga0214921_100185917F051126AGGMSAKPYTIASLLEGKHYRSHSRHDEGTILYAEKRDSVWYGSDFEAYAIEVRSTRGIKNFWATVAVKVSD
Ga0214921_100185919F001562N/AMEKTQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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