NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10111791

Scaffold Ga0214921_10111791


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10111791 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2001
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F014017Metagenome / Metatranscriptome266Y
F028166Metagenome / Metatranscriptome192Y
F078716Metagenome / Metatranscriptome116N
F088905Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101117911F078716N/AMSENGTGTPTAPISEPSGALTSREVPKRYPKQGSRPGIKIDQNKHGIRRETSLDPKPQKKGRPKKV
Ga0214921_101117912F001280GAGGMCIECGCESLGSETGIIPVTIIDASRDGESGLTLAMTSTPEQTRQFINE
Ga0214921_101117913F088905N/AMSEKDIDKTPVVEVKEEVKVEPKAEAKSAPVADSTDYWANAWANRGV
Ga0214921_101117914F028166AGGAGMSDGKDLNGFNELQAGASNSLDLNPTGQAPASAFPAEDKSTQDGAGLGQNGK
Ga0214921_101117916F014017AGGMDKIEDYLDEKHRKKIADEIRYLELPPEWRPNEVIRYIVRIIEKSNG
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