NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10010667

Scaffold Ga0214919_10010667


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10010667 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11592
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y
F026561Metagenome / Metatranscriptome197Y
F074876Metagenome / Metatranscriptome119Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001066710F074876N/AMVQDANWLVSQVKEYYEVINIVYLHDLKVYGTVEQMGAYASVVKYKKEDIEYEELIENDEFAIIDEIVFQHVEEEN
Ga0214919_1001066711F000671GAGGMEKILCYSCNKSKNKLNVRKSSLLAINLLMCETCVTTKLEPRWVIILAGRQFGPDFVREVILKKRYIGNDIAASELLV
Ga0214919_1001066712F077310N/AMPLDANYIVVVISASAVSGIGTALVVGRIEAKREKIRKTEREQDALKIELKDLQIKLYQLEKDLNEWREKYYNAIQELISVKAELEESLIKLSLIDLELHTHDD
Ga0214919_1001066717F008814GGAGMADMTVLEGIVKDIGVELYQKWYNALAIEERTEEISAALGHNANETAIWVIQTFMNKFNAAADQLKDS
Ga0214919_1001066724F026561GGAMSMDGTGMTPPPQSSPAGAVNSTEVGRKKPHQGKLRSGLKVDTNRHGIRRETSLDPKPPRKVGRKKI
Ga0214919_100106674F014140N/AMNTYRVKLDVEIEVEAFNEADAKDYVGDIFNIDDEIKSVNIIKIREK
Ga0214919_100106677F012975AGGMLHLTLKGVEIFIERSKTKSQESYWDNYDLMIWKKDSGGFSSVKGMFRKDSWGIADRISVNEQGVWKLPAKYVKHFK
Ga0214919_100106679F000473AGGAMASDKNHFKYGINQWTGEPAKPVFYTPEMAKRVREIPQPVLLLMDVAMYPDFIGIKLYEDNFMQFDGSSKERVIDYVGKVKKLIESYGTRCELVGVPSERVL
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