NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10020867

Scaffold Ga0214919_10020867


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10020867 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7323
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F004006Metagenome / Metatranscriptome457Y
F013888Metagenome / Metatranscriptome267Y
F059715Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100208671F004006AGGAMTEDIEGLVTSISMNQVLVAILEEHGKIVVPTLRFLDANVGNKELVIDYDETGPSFTFSLREKDGIESSTN
Ga0214919_1002086714F013888GGAMSTIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGEYNDTVLIGMPDTYILNAPGNIYKGLFKEDTADLVLGIWECGENLKGRVGQVLISNDKVIDSEDKVDNCNYPDMWGTMLFRKNMIRYIDTTLDHPGKQLKEWISKGANIKAVRPGGQYMDIGTLRGLKQLYKEME
Ga0214919_1002086716F000369N/AMSEIELSQHFDRMNRVVEELLKGSTPTQIATITGMQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIAAQIAETERKQDVLVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPVEEADVV
Ga0214919_1002086717F059715GAGGMSFDFNDLIDMLDGEEFDEKPVDLKTFVRSPEYLGLPELSDYQYTL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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