NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10059696

Scaffold Ga0214919_10059696


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10059696 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3547
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003379Metagenome / Metatranscriptome490Y
F092052Metagenome / Metatranscriptome107Y
F093318Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1005969610F093318AGTAGGMQIQYVSKYIALSEEGLVPRLECPMDQGPLLPNQDNEDRVFVYCLSCQYKKVLGSKDYEDIVKAVNNVG
Ga0214919_100596964F003379GGAMLIATAILSGVALSKFLKWAGQEEIFDFDLDEEIDNEQI
Ga0214919_100596969F092052N/AMLDECKNGQCTCEQEDNFFHVKVIPQNSAESSAAVEEAFSSYEFQSNAIIDKDAMGREVFWNDMGRP
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