NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233412_10000335

Scaffold Ga0233412_10000335


Overview

Basic Information
Taxon OID3300023210 Open in IMG/M
Scaffold IDGa0233412_10000335 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)27673
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (9.09%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6569Long. (o)-123.4875Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025412Metagenome202Y
F027524Metagenome194N
F028650Metagenome191N
F036312Metagenome170Y
F059442Metagenome134Y
F076108Metagenome118N
F100003Metagenome103N
F103288Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0233412_1000033511F028650N/AMRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDREDVLKQKPSEIAVDLSHLLVEPSRVLKQYFTINGKRYGIVNHINDLEAGQYMSFTTYLKGFADNPNVHIEQMPDILASVIFPVDKNNKVMAIEPSYFRNLADDIRNTMSIEDAYPICVFFCLLSTSLMKTTQDYLNQKVEKMTTESRNVILEVAKDLERDGDGLPPSIISAMETLQKDHTTKK
Ga0233412_1000033516F100003N/AMKIKRKHYKALQYASLIQRWKYLPTNFIFEVVQNSEVNETMLNRNRIEQNGK
Ga0233412_1000033518F025412N/AMDYRKLKWGALKSYATKLGINTKGMTKQVLLEWLDAMPDEAHGIEELKPFTGIKQEHPLFEEIKDYLPYLKAYKKLHAISPVPEVNKAIAALFLKYIEEDKNIRLNLGCGICKQRYYERMIAGYNRLVDEYGGERI
Ga0233412_1000033519F103288N/AMTIIIISILAVLGWTNLFKQTFTTKEGFRYVYQPISKILYTLDFKPLSCAYCLSFWFGLVLTIGSLDINYMIIFLYFAKQD
Ga0233412_1000033520F027524N/AVNESFIKEKRQVIETACKNICKHSDIWKDLSQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISENVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK
Ga0233412_1000033532F059442N/AMRKEDRFKPYIYKVYNSRGKLEEYSRYYYTKKEALDWYNKQGKWLEKHLNRKLILIDTDINLFTYLKNYDNITKNINKEILS
Ga0233412_1000033536F036312N/AMKRKLTHSLCEMQKVHKDLYEVYTTDFWDNGTYTIKDISHHSTEREAKEQKEINKHKNIN
Ga0233412_1000033538F076108N/AMTRIELSDDEIEYSTYFPIRDAHDIMYSFEEMVRMYTKADLEVDTYILERAKEIHIKKSN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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