Scaffold Ga0257020_137936

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257020_137936

Scaffold Ga0257020_137936

Overview

Basic Information
Taxon OID	3300023445 Open in IMG/M
Scaffold ID	Ga0257020_137936 Open in IMG/M
Source Dataset Name	Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 34 Individual Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Western Washington University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	916
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location Name	Loihi Seamount, Hawaii, USA
Coordinates	Lat. (^o)	18.903	Long. (^o)	-155.257	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012282	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257020_1379361	F012282	N/A	TSATDVKFFVITNPDQVYYIQCSLTLSAAEAAICLNYPVTVSSTASSGSTVTGNSSYYLLAAGGLETELTCRVLGRAKFPGEGNDDAYPIVEVWLNTHRDRYVTATASTA

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