Scaffold Ga0233343_1004428

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233343_1004428

Scaffold Ga0233343_1004428

Overview

Basic Information
Taxon OID	3300024039 Open in IMG/M
Scaffold ID	Ga0233343_1004428 Open in IMG/M
Source Dataset Name	Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-277
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1174
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	40.2198	Long. (^o)	-122.9842	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F106076	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233343_10044281	F106076	N/A	LLFPCIKEWXAYVTVTPDDSKITVFSKGNSKGFTASIPIGGHXAPNSTVGDRALXKKAQKILKKNNASDIINRATPMFNPLCTASVXFPKYVPSLITSLHHNDIDEIRATKANAKKFSALEKPCIVNTPHVVKVNKLKDENIGQGEGDTKWKGXPXKLLLVKIVMFILLLL

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