NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247669_1000075

Scaffold Ga0247669_1000075


Overview

Basic Information
Taxon OID3300024182 Open in IMG/M
Scaffold IDGa0247669_1000075 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52352
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (68.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000574Metagenome / Metatranscriptome1016Y
F003957Metagenome / Metatranscriptome460Y
F071684Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0247669_100007532F000574N/AMGAVWVSNNRHWDELAGQNTLTQLLGSGTPTQREYLGCLVGDVVGDTLFVQRLLEASDLRQLQFAVAGNCDHVDRLVGTFHTHPYRADSAGHALKERGLSTMDLRTFAAATDLVTMVMWDLDSLDVAIKAPDGSVRHPAPVTVR
Ga0247669_100007540F071684AGGMHVSQIRVAILTGILVTLVACGGAARRQAAPAGPPPEVLKALEVPPSPYYLIYSPPVSLAKPPDTTAHARKPRS
Ga0247669_10000757F003957GGAMRLLFVAALALLGATRVMAQEVERWQITLNDGRIIWELQLVRMRGDTLVARHADSTYRFPLSQLDELRLVVKAERHQTPEPDRYGGVLNGADDEIYRLTLYSLPERREIIGKILKDHPPPSPDSR
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