NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224572_1001981

Scaffold Ga0224572_1001981


Overview

Basic Information
Taxon OID3300024225 Open in IMG/M
Scaffold IDGa0224572_1001981 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3200
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022512Metagenome / Metatranscriptome214Y
F038796Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0224572_10019812F038796GAGMVDKITAQRDVEYFYELLAKETDENKRVILQRLLADAEKLRQSDDQVEKGDKNTKAGQRNSKDD
Ga0224572_10019815F038796GAGMVDKITAQRDVEYFYELLAKETDENKRVILQRMLADAEKLRQSDDQEEKGDKNTKADQRNSKDD
Ga0224572_10019817F022512GAGMPPPVANNKQRIITIYVLIALGFAGLIGAHEVAGPDENSDLTLPFILAAAGTLCFVAAGLMARRLMKGGGSR
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