NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247660_1081656

Scaffold Ga0247660_1081656


Overview

Basic Information
Taxon OID3300024317 Open in IMG/M
Scaffold IDGa0247660_1081656 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)551
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010580Metagenome / Metatranscriptome302Y
F045399Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0247660_10816561F045399N/ANSNTPTTYETVYDPATNGAKWLTPTAVLLPRFMRFNVQFDF
Ga0247660_10816562F010580AGGMKNVIIAATVIVVAALGAGSVDAKEQSVTGTWTLKVEHLGLKLELVQKKTAVTGTLDWPHGDPIKLAGAFTGDTLTFGGDSGGENFSVHIDSTGTLKADGTMTGTLRAHFVDFNDAHETVRKRDQEIPWTAERGEHGI

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