NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179591_1014660

Scaffold Ga0179591_1014660


Overview

Basic Information
Taxon OID3300024347 Open in IMG/M
Scaffold IDGa0179591_1014660 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3547
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025827Metagenome / Metatranscriptome200Y
F055871Metagenome / Metatranscriptome138Y
F089925Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0179591_10146603F055871GGAMLSLFAIPLFVVDLLMEANNEEYPFAKTSYAFRTALATAAFVVLALFSGSNLNAFVYFRF
Ga0179591_10146604F089925GGAGMPSSTSGSKSKTMTYAKALAAICAALILMFELASIYLLNHRSATYARISRQYDEALKIRPASAGEPPNVLMVGNSLLLHGVQVNRLQEMTSSSMRIYPIFLEATGYYDWLYALHGLFFVEPGRRL
Ga0179591_10146605F025827N/AVNQKPAVPEGREFTELTIPRLRRLRELCDANGVRLILLVPPTLDSENAVSQMAAAAQAAGVDVSVPINPAMLSPKFYQPDGMHLNRDGAVLFTSALAKALPEKVMAHETLAAQK
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