NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10039501

Scaffold Ga0244776_10039501


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10039501 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3748
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025716Metagenome / Metatranscriptome200Y
F077167Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0244776_100395016F025716GGAGMDEKEVERMINAAGLIGAIIGFVSGVSLMTLVAIIF
Ga0244776_100395017F077167GGAGMNVKLKESDIGIMVRCAENGLDQTQTAEILNVSPATISRNAKRFGVKFKTVKDKTCDKCGVDSCVCKTTETAKVDDRKVEKPKQTEPDAAIRGNPRAWSVDKKKHRKELAIAAIQKETRKEVIKEISYGWNILEFELEMAKLGKRPALPMQIKTPNKELMQKEKNRLLKISEDRRHHIISFFEIGKDYTVPELKNMMGDDNMGMNASVISGLMNGLVQMGRLKKYRLDYQKNKPDYWLYYLPNQALKERTHD
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