NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190286_1007859

Scaffold Ga0190286_1007859


Overview

Basic Information
Taxon OID3300024423 Open in IMG/M
Scaffold IDGa0190286_1007859 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3395
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0074Long. (o)-110.591Alt. (m)Depth (m)2001
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F096387Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0190286_10078592F009582GAGMVKEARVDVILQRIDEDIGDELNVHPKHVRRYGVNNIFTRAFAYLLGWRNDGKPVKLNATTGGLLKVAISGAGFEQIDTLTGTAGLSWSSVLTFAWIPNRIRFESLDYPYEVKFSLDKITWSDSVIVDEGTPRDYDICAKYIKVKRFGGNDATYWAIAMK
Ga0190286_10078595F096387GAGMTSYIREVAIVGLVVLEAIALMKGIDGTLLSVVIAVIAGLAGYTVRRVRE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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