NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209728_1000047

Scaffold Ga0209728_1000047


Overview

Basic Information
Taxon OID3300024999 Open in IMG/M
Scaffold IDGa0209728_1000047 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - Groundwater D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119639
Total Scaffold Genes214 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)177 (82.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.55Long. (o)-107.97Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048726Metagenome / Metatranscriptome147Y
F091086Metagenome107Y
F098345Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209728_1000047117F098345N/AMQKPKNIKNLTHSASILNSLYLGKEIIYTGTGHSLRPYKGEIINIAYYSDLDPVPYAEIKLKIWNNRTVTKILPLSEIVLVSSQKKTKTKKSKVAA
Ga0209728_100004719F091086GAGGMQNIINTIKISNNPNEVKQILKPLKIKEVIKVAKCLDVCIRGNENKTEVIGNIILAIVKE
Ga0209728_1000047201F048726AGGAGGMATNFIGRSLTANILEQNVELNMSFINLIVNDSANVITLAFDVTATTNIMILKAGEVRKNIAVPFGKLYYKATADASALRIEGLAKAEF
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