Basic Information | |
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Taxon OID | 3300024999 Open in IMG/M |
Scaffold ID | Ga0209728_1000048 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Rifle, Colorado, USA - Groundwater D1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 118022 |
Total Scaffold Genes | 252 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 212 (84.13%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Rifle, Colorado, United States | |||||||
Coordinates | Lat. (o) | 39.55 | Long. (o) | -107.97 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F057792 | Metagenome | 135 | Y |
F091086 | Metagenome | 107 | Y |
F098345 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209728_1000048143 | F091086 | N/A | MRDVNEVKIMQDIINTIKISTNPNEVKQILKPLKIKDVINVAKALDVYIRGNENKTEIIGNIILGIIKYKRSD |
Ga0209728_100004842 | F098345 | N/A | MQRPKNIKNLTHSASMLNSLYLGKEIVYTGTGHSLRPYRGEIINIAYYSDLDPIPYAEIKLKLWNNRTVTKILPLSEIILVSSLKKTKTKKSKVAA |
Ga0209728_100004891 | F057792 | AGGAGG | MASTARGLHISAINALLVKHGATLDKYGMYHIGNYKFDTRAVNLKIHHGKIKIKSVPMMKVTLESLERSLKIYVKESES |
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