Scaffold Ga0208667_1002682

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208667_1002682

Scaffold Ga0208667_1002682

Overview

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1002682 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5647
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046979	Metagenome / Metatranscriptome	150	Y
F057353	Metagenome	136	N
F089560	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100268210	F089560	AGG	MTQHTDKVEKRRQETLEERMDTTLTCYYFQKHEKNQDIEDYRQLDYASGRRVVTNISKSGRPKTTQNKPMRRHLFISSFGRYFRND
Ga0208667_100268214	F046979	GAGG	MKCFNCNANMKLEREKDISRYNNLFNLKLTFGCPKCGAVANAYPPKDDNQEVSHGR
Ga0208667_10026826	F057353	AGGAG	MSVTHYNFRKPKINRQEHEAINKILTHPHFNALINPKALEVLTELGISDKQFQDIINKNKSILKNYKTKEMK

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