NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1025998

Scaffold Ga0208298_1025998


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1025998 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1255
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033634Metagenome / Metatranscriptome177Y
F052940Metagenome142N
F060867Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_10259981F033634GGAMCHAIETLIKWCRGRQTTVLDDILGAVALFAMLFILLLITP
Ga0208298_10259982F052940GAGGMGNRATIEVKDETGSAPCYAYVHWNGSPEQVIEVVVKAAPVMRARDCQYAMARLIGTYHGEIEGGLSLGVTDYKEEWDNGHYVVDMERGKITNGRKVVAKGLEFGQF
Ga0208298_10259984F060867AGGAMQTETYNDAVESTKHTLGNKLKFKLEFMVMMLQAGRTEEAGKMYNQLIEEFDKLA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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